To simplify your later task of finishing your own articles, you should include in every bookmark, annotation and highlighted text the source, in brackets for example "". Create annotations, bookmarks and text highlighting as desired in PDFXChange, and save. Click the links there to start reading, with PDFXChange as your PDF reader. Order them into your reading list in Literature & Annotations.mm. Reading and annotating. All files you want to read will now appear in your Incoming.mm in Docear, because you added them to your Literature directory.This will enable other researchers in your group to see your notes, once you read the file and uploaded it to this place. Add a (hypothetical) web links to your annotated file as attachment to the respective literature entry in your Zotero group. This is because this file will contain your annotations, and files with other author suffixes will contain their annotations. Download them with Zotero to your "Literature" directory and name them according to their key in Zotero, plus your author shortname (example: ).Use your Zotero browser plugin or standalone application to browse through your group's shared bibliography and select items you want to read.Create attachments to the entries, linking to the online fulltext of these articles. Use tags to mark documents you have read and want to read. Document collecting. Whenever you find an interesting document on the web, use the Zotero browser plugin to create a literature entry in your Zotero group.As an alternative for multi-author websites and when wanting to convert WordPress posts to books eventually, you may try the Enhanced BibliPlug plugin together with the Enhanced Publication plugin. ZotPress plugin for WordPress. Zotero integration for WordPress: to insert literature references and manage bibliographies for your WordPress posts, and to display lists of literature works based on tags.For finishing the writing of articles and theses, and for PDF generation. wine/drive_c/Program\ Files/PDFXChangeViewer/PDF\ Viewer/PDFXCview.exe To start it comfortably with wine, create an executable file /usr/local/bin/pdfxchange with the following content: PDF-XChange Viewer. Not free software, but gratis, and recommended by Docear as the compatible PDF reader, when taking care to set it to incremental saving. In Linux, to be installed with wine, which works surprisingly perfect.It will be installed during the installation process of Zotero Standalone. Note that this is offered twice on the site, it's the same as "Zotero for Chromium". Zotero browser extension for Chromium.The free-software-only version of Chrome. My proposal uses the following tools, which you should install (available for both Windows and Linux): Solution Proposal: Docear + Zotero Tool collection free and open source software as much as possible.tools should work cross platform (Linux, Windows, Mac).both web-published (HTML and PDF) and local versions shall have working hyperlinks to cited works, including links to the page.automatic creation of a references list when writing, both in WordPress and LibreOffice. ability to write scientific articles in LibreOffice, with easy web publishing both as HTML in a WordPress site, and as PDF.ability to write scientific articles in WordPress.ability to draft scientific articles and theses in a mindmap-style, "notes organizing" mode.visually navigable documents when writing (no, not TeX or HTML source).flexible means for organizing note collections, with links to the part of the annotated document.creating notes on documents collaboratively, synced to everybody in a group.adding to the literature database collaboratively, synced to everybody in a group.literature database, with both metadata and fulltexts. (And thanks to mantas in the comments, whose tip for Docear lead to this major rework of an earlier article, which was using Freemind instead.) Requirements This is so far just a proposal – I did not fully test it out yet, but have exlored options for two days and this seems best, for my requirements.
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